species:   Artha
pid:       MI0019236
parent:    ath-MIR5653
paralog:   
locus:     1:19026915-19027000
matures:   ['UGGGUUGAGUUGAGUUGAGUUGGC', 'CAAUAACUCAUUUGACCCAUC']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 1:19026915-19027000

49 out of bounds
9 alignments
3 proper strand
3 stranded perfect matches

 ***********************                                   ************************** 
CCCAAUAACUCAUUUGACCCAUCAACUCAUUUGAGUCAAAAAAUUUAACUCAUUAGGGUUCAUGGGUUGAGUUGAGUUGAGUUGGC
.(((((((((((((((((((((.(((((...(((((.(((...))).)))))...))))).)))))))))).))))))..))))).
--------------------------------------------------------------UGGGUUGAGUUGAGUUGAGUUGGC l=24 a=0 c
--CAAUAACUCAUUUGACCCAUC--------------------------------------------------------------- l=21 a=0 c*
-------------------------------------------------------------AUGGGUUGAGUUGAGUUGAGUUGG- l=24 a=1 ma
---AAUAACUCAUUUGACCCAUCA-------------------------------------------------------------- l=21 a=0 ma*

-------------------------------------------------------------AUGGGUUGAGUUGAGUUGAGUUGG- l=24 a=1 (ma)
-------------------------------------------------------GGGUUCAUGGGUUGAGUUGAGU--------- l=22 a=1 
--------------------------------------------UUAACUCAUUAGGGUUCAUGGGUU------------------ l=24 a=1 

mb-01011
ax-1011011
ku-01
ss-110110011100
fn-001
